Package: LOCOM2
Type: Package
Title: A Logistic Regression Model for Testing Differential Abundance
        in Compositional Microbiome Data
Version: 1.0
Date: 2026-04-18
Authors@R: person(given = "Yi-Juan",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "yijuanhu@bicmr.pku.edu.cn")
Maintainer: Yi-Juan Hu <yijuanhu@bicmr.pku.edu.cn>
Description: Testing differential abundance at individual taxa and in a
        whole microbial community. The tests are based on the log-ratio
        of relative abundances. The tests accommodate continuous,
        discrete (binary, categorical), and multivariate traits, and
        allows adjustment of confounders.
License: GPL (>= 2)
RoxygenNote: 7.3.2
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.11), stats, permute, parallel, BiocParallel,
        matrixStats, abind, car
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, survival
URL: https://github.com/yijuanhu/LOCOM2
BugReports: https://github.com/yijuanhu/LOCOM2/issues
Encoding: UTF-8
LazyData: true
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://yijuanhu.r-universe.dev
Date/Publication: 2026-04-26 06:43:07 UTC
RemoteUrl: https://github.com/yijuanhu/locom2
RemoteRef: HEAD
RemoteSha: c038cb499f5c2b6569066389345a4a5dc43dd125
NeedsCompilation: yes
Packaged: 2026-10-10 17:14:45 UTC; root
Author: Yi-Juan Hu [aut, cre]