Package: TestNet 1.0
TestNet: A method for inferring microbial networks with false discovery rate control for clustered and unclustered samples
TestNet is a testing method for inferring microbial networks. It differs from existing microbial network analyses in that it provides calibrated results by controlling the false discovery rate. TestNet accounts for the features of compositionality, sparsity, and overdispersion in taxa count data. It also accommodates both independent and clustered samples, offers separate linear and nonlinear tests for each pair of taxa, and includes an omnibus test that bypasses the need to pre-specify the type of relationship for each pair of taxa.
Authors:
TestNet_1.0.tar.gz
TestNet_1.0.zip(r-4.7-any)TestNet_1.0.zip(r-4.6-any)TestNet_1.0.zip(r-4.5-any)
TestNet_1.0.tgz(r-4.6-any)TestNet_1.0.tgz(r-4.5-any)
TestNet_1.0.tar.gz(r-4.7-any)TestNet_1.0.tar.gz(r-4.6-any)
TestNet_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TestNet/json (API)
| # Install 'TestNet' in R: |
| install.packages('TestNet', repos = c('https://yijuanhu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yijuanhu/testnet/issues
- sim.otu.tab - OTU count table of the simulated microbiome samples
Last updated from:7623747e14. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 191 | ||
| source / vignettes | OK | 223 | ||
| linux-release | NOTE | 186 | ||
| macos-release | NOTE | 134 | ||
| macos-oldrel | NOTE | 185 | ||
| windows-devel | NOTE | 142 | ||
| windows-release | NOTE | 143 | ||
| windows-oldrel | NOTE | 114 | ||
| wasm-release | OK | 99 |
Exports:TestNet
Dependencies:dcovmatrixStatspermuteRcppRcppArmadillo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| OTU count table of the simulated microbiome samples | sim.otu.tab |
| A testing method for inferring microbial networks | TestNet |